Epistasis - Y (wtccc_t2d); I (fastGlu)
Yanyu Liang
February 28, 2018
Read data
source("scripts/myRLib.R")
funcset <- readLines("output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/func_subset.set")
funcset <- parseFuncSet(funcset)
funcset.names <- names(funcset)
xtyi.files <- strsplit("output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e+00.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-01.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-01.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-02.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-02.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-03.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-03.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p3.0000e-04.assoc.logistic:output-direction_XT_YI/fastGlu__wtccc_t2d__wtccc_ctrl/xtyi_LDpred_p1.0000e-04.assoc.logistic",
":")[[1]]
ps <- strsplit("1,0.3,0.1,0.03,0.01,0.003,0.001,0.0003,0.0001",
",")[[1]]
inter.files <- strsplit("output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p1.0000e+00.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p3.0000e-01.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p1.0000e-01.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p3.0000e-02.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p1.0000e-02.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p3.0000e-03.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p1.0000e-03.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p3.0000e-04.assoc.logistic:output-run_step2/fastGlu__wtccc_t2d__wtccc_ctrl/interaction.func_subset_LDpred_p1.0000e-04.assoc.logistic",
":")[[1]]
prs.files <- strsplit("../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e+00.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-01.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-01.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-02.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-02.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-03.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-03.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p3.0000e-04.txt:../step1/output-run_step1/fastGlu__wtccc_t2d__wtccc_ctrl/ldpred_LDpred_p1.0000e-04.txt",
":")[[1]]Epistasis
for (i in 1:length(xtyi.files)) {
cat("##", funcset.names[i])
cat("
")
cat("
")
snp.subset <- funcset[[funcset.names[i]]]
# read I ~ SNP
prs <- read.table(prs.files[i], header = T)
prs$sid <- as.character(prs$sid)
prs.sub <- prs[prs$sid %in% snp.subset, ]
# read others
xtyi <- read.table(xtyi.files[i], header = T)
xtyi$SNP <- as.character(xtyi$SNP)
yt.xtyi <- xtyi[(xtyi$SNP %in% snp.subset) & (xtyi$SNP %in%
prs.sub$sid), ]
yt.xtyi.xt <- yt.xtyi[yt.xtyi$TEST == "ADD", ]
yt.xtyi.yi <- yt.xtyi[yt.xtyi$TEST == "PRS", ]
inter <- read.table(inter.files[i], header = T)
inter$SNP <- as.character(inter$SNP)
inter <- inter[inter$TEST == "ADDxPRS", ]
yt.inter <- inter[(inter$SNP %in% snp.subset) & (inter$SNP %in%
prs.sub$sid), ]
# order all rows
yt.xtyi.xt <- yt.xtyi.xt[order(yt.xtyi.xt$SNP), ]
yt.xtyi.yi <- yt.xtyi.yi[order(yt.xtyi.yi$SNP), ]
yt.inter <- yt.inter[order(yt.inter$SNP), ]
prs.sub <- prs.sub[order(prs.sub$sid), ]
# check direction
prs.sub$nt1 <- as.character(prs.sub$nt1)
yt.xtyi.xt$A1 <- as.character(yt.xtyi.xt$A1)
yt.inter$A1 <- as.character(yt.inter$A1)
if (sum(prs.sub$nt1 != yt.xtyi.xt$A1) != 0 | sum(prs.sub$nt1 !=
yt.inter$A1) != 0) {
print("Direction does not match. Exit!")
quit()
}
yt.xtyi.xt.mean.std <- getMeanStd(yt.xtyi.xt$SNP, yt.xtyi.xt$P,
yt.xtyi.xt$OR, "Y~Gi+I (Gi)")
yt.xtyi.yi.mean.std <- getMeanStd(yt.xtyi.yi$SNP, yt.xtyi.yi$P,
yt.xtyi.yi$OR, "Y~Gi+I (I)")
yt.inter.mean.std <- getMeanStd(yt.inter$SNP, yt.inter$P,
yt.inter$OR, "Y~Gi*I")
prs.sub.mean.std <- data.frame(SNP = prs.sub$sid, Mean = prs.sub$ldpred_beta,
Std = 0, Type = "I~Gi")
# create data frame for plot
df <- rbind(yt.xtyi.xt.mean.std, yt.xtyi.yi.mean.std, prs.sub.mean.std,
yt.inter.mean.std)
p <- ggplot(df) + geom_point(aes(x = SNP, y = Mean)) + geom_errorbar(aes(x = SNP,
ymin = Mean - 1.96 * Std, ymax = Mean + 1.96 * Std),
colour = "black", width = 0.1) + geom_hline(yintercept = 0,
color = "red") + facet_grid(. ~ Type, scales = "free_x") +
coord_flip() + theme(axis.text.x = element_text(angle = 90,
hjust = 1))
p2 <- ggplot(yt.inter) + geom_bar(aes(x = SNP, y = -log10(P)),
stat = "identity") + coord_flip() + ggtitle("Interaction P-value")
print(p)
print(p2)
pander(yt.inter)
cat("
")
cat("
")
}p1.0000e+00
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 0.9958 | -0.04105 | 0.9673 |
90 7 rs10267273 0 T ADDxPRS 4862 1.13 1.19 0.2342
51 6 rs10458159 0 T ADDxPRS 4862 1.131 1.022 0.3068
42 5 rs10476539 0 A ADDxPRS 4862 1.102 0.7515 0.4523
108 10 rs10509645 0 A ADDxPRS 4862 1.396 3.084 0.002045
132 10 rs10787472 0 C ADDxPRS 4862 0.939 -0.6127 0.5401
105 9 rs10811661 0 C ADDxPRS 4862 1.077 0.5104 0.6098
141 10 rs10885409 0 C ADDxPRS 4862 0.9884 -0.1132 0.9099
72 6 rs10946398 0 C ADDxPRS 4862 0.9398 -0.5905 0.5548
159 14 rs11160006 0 C ADDxPRS 4862 1.016 0.1598 0.873
144 10 rs11196208 0 C ADDxPRS 4862 1.006 0.05767 0.954
57 6 rs11243149 0 G ADDxPRS 4862 1.19 1.662 0.09655
60 6 rs11243150 0 C ADDxPRS 4862 1.19 1.663 0.09625
6 3 rs11709077 0 A ADDxPRS 4862 1.052 0.3285 0.7425
135 10 rs12243326 0 C ADDxPRS 4862 0.8724 -1.224 0.221
30 3 rs1470579 0 C ADDxPRS 4862 1.048 0.4386 0.661
96 7 rs1549392 0 G ADDxPRS 4862 0.953 -0.4668 0.6407
153 13 rs16975654 0 A ADDxPRS 4862 0.8526 -1.056 0.2908
9 3 rs17036328 0 C ADDxPRS 4862 1.075 0.4649 0.642
33 4 rs223452 0 T ADDxPRS 4862 0.9002 -1.023 0.3065
102 9 rs2383208 0 G ADDxPRS 4862 1.053 0.3579 0.7204
162 18 rs299751 0 G ADDxPRS 4862 1.084 0.5623 0.5739
123 10 rs4074720 0 T ADDxPRS 4862 0.9198 -0.8226 0.4108
129 10 rs4132670 0 A ADDxPRS 4862 0.9058 -0.9099 0.3629
21 3 rs4376068 0 C ADDxPRS 4862 1.044 0.4053 0.6852
24 3 rs4402960 0 T ADDxPRS 4862 1.036 0.3283 0.7427
18 3 rs4607103 0 T ADDxPRS 4862 0.9206 -0.6687 0.5037
150 12 rs4883520 0 T ADDxPRS 4862 1.121 1.043 0.297
111 10 rs5015480 0 T ADDxPRS 4862 1.299 2.47 0.01351
147 11 rs570583 0 G ADDxPRS 4862 1.013 0.1298 0.8967
165 20 rs6124298 0 A ADDxPRS 4862 1.167 1.366 0.1721
69 6 rs6456368 0 C ADDxPRS 4862 0.9467 -0.5152 0.6064
48 6 rs6940109 0 T ADDxPRS 4862 1.107 0.8263 0.4086
138 10 rs7077039 0 C ADDxPRS 4862 0.9496 -0.4989 0.6178
36 4 rs724447 0 C ADDxPRS 4862 0.862 -1.447 0.148
156 14 rs760233 0 T ADDxPRS 4862 1.254 1.92 0.05482
27 3 rs7651090 0 G ADDxPRS 4862 1.039 0.3622 0.7172
39 4 rs7676765 0 C ADDxPRS 4862 0.8613 -1.454 0.1461
54 6 rs7741671 0 C ADDxPRS 4862 1.135 1.054 0.2921
81 6 rs7767391 0 C ADDxPRS 4862 0.9913 -0.07045 0.9438
93 7 rs7798124 0 A ADDxPRS 4862 1.134 1.251 0.211
120 10 rs7901275 0 C ADDxPRS 4862 1.095 0.8812 0.3782
126 10 rs7901695 0 C ADDxPRS 4862 0.8865 -1.106 0.2686
117 10 rs7917983 0 C ADDxPRS 4862 1.152 1.367 0.1716
114 10 rs7923866 0 T ADDxPRS 4862 1.214 1.827 0.06764
12 3 rs9311101 0 A ADDxPRS 4862 0.9685 -0.2875 0.7738
45 5 rs9313871 0 G ADDxPRS 4862 1.146 1.055 0.2913
3 1 rs9324187 0 T ADDxPRS 4862 1.046 0.4339 0.6643
66 6 rs9348440 0 T ADDxPRS 4862 1.045 0.2968 0.7666
63 6 rs9366357 0 T ADDxPRS 4862 1.022 0.2113 0.8326
84 6 rs9369425 0 G ADDxPRS 4862 0.9605 -0.3675 0.7132
75 6 rs9460546 0 G ADDxPRS 4862 0.9398 -0.5905 0.5548
78 6 rs9465871 0 C ADDxPRS 4862 0.9577 -0.3444 0.7306
87 6 rs9472138 0 T ADDxPRS 4862 0.9552 -0.4177 0.6762
15 3 rs9860730 0 G ADDxPRS 4862 1.009 0.07621 0.9393
p3.0000e-01
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.037 | 0.3755 | 0.7073 |
90 7 rs10267273 0 T ADDxPRS 4862 1.088 0.8756 0.3813
51 6 rs10458159 0 T ADDxPRS 4862 1.11 0.9269 0.354
42 5 rs10476539 0 A ADDxPRS 4862 1.063 0.5064 0.6126
108 10 rs10509645 0 A ADDxPRS 4862 1.394 3.233 0.001224
132 10 rs10787472 0 C ADDxPRS 4862 0.9484 -0.5501 0.5823
105 9 rs10811661 0 C ADDxPRS 4862 1.146 0.9947 0.3199
141 10 rs10885409 0 C ADDxPRS 4862 1.008 0.08186 0.9348
72 6 rs10946398 0 C ADDxPRS 4862 0.9577 -0.4381 0.6613
159 14 rs11160006 0 C ADDxPRS 4862 1.033 0.3345 0.738
144 10 rs11196208 0 C ADDxPRS 4862 1.021 0.2176 0.8277
57 6 rs11243149 0 G ADDxPRS 4862 1.209 1.923 0.05449
60 6 rs11243150 0 C ADDxPRS 4862 1.209 1.924 0.05432
6 3 rs11709077 0 A ADDxPRS 4862 1.089 0.5793 0.5624
135 10 rs12243326 0 C ADDxPRS 4862 0.8879 -1.132 0.2576
30 3 rs1470579 0 C ADDxPRS 4862 1.076 0.7253 0.4683
96 7 rs1549392 0 G ADDxPRS 4862 0.9985 -0.01499 0.988
153 13 rs16975654 0 A ADDxPRS 4862 0.8707 -0.9706 0.3318
9 3 rs17036328 0 C ADDxPRS 4862 1.097 0.6353 0.5253
33 4 rs223452 0 T ADDxPRS 4862 0.915 -0.9158 0.3598
102 9 rs2383208 0 G ADDxPRS 4862 1.124 0.8542 0.393
162 18 rs299751 0 G ADDxPRS 4862 1.068 0.489 0.6248
123 10 rs4074720 0 T ADDxPRS 4862 0.9258 -0.8074 0.4194
129 10 rs4132670 0 A ADDxPRS 4862 0.9115 -0.9077 0.3641
21 3 rs4376068 0 C ADDxPRS 4862 1.072 0.6885 0.4911
24 3 rs4402960 0 T ADDxPRS 4862 1.066 0.6296 0.529
18 3 rs4607103 0 T ADDxPRS 4862 0.9185 -0.7311 0.4647
150 12 rs4883520 0 T ADDxPRS 4862 1.093 0.8715 0.3835
111 10 rs5015480 0 T ADDxPRS 4862 1.28 2.468 0.01359
147 11 rs570583 0 G ADDxPRS 4862 1.01 0.1072 0.9146
165 20 rs6124298 0 A ADDxPRS 4862 1.155 1.342 0.1794
69 6 rs6456368 0 C ADDxPRS 4862 0.9644 -0.3628 0.7167
48 6 rs6940109 0 T ADDxPRS 4862 1.073 0.6069 0.5439
138 10 rs7077039 0 C ADDxPRS 4862 0.9712 -0.3004 0.7639
36 4 rs724447 0 C ADDxPRS 4862 0.8727 -1.406 0.1596
156 14 rs760233 0 T ADDxPRS 4862 1.214 1.742 0.08143
27 3 rs7651090 0 G ADDxPRS 4862 1.068 0.6548 0.5126
39 4 rs7676765 0 C ADDxPRS 4862 0.8718 -1.416 0.1567
54 6 rs7741671 0 C ADDxPRS 4862 1.118 0.9899 0.3222
81 6 rs7767391 0 C ADDxPRS 4862 1.002 0.01932 0.9846
93 7 rs7798124 0 A ADDxPRS 4862 1.092 0.9252 0.3549
120 10 rs7901275 0 C ADDxPRS 4862 1.09 0.8843 0.3765
126 10 rs7901695 0 C ADDxPRS 4862 0.8916 -1.121 0.2623
117 10 rs7917983 0 C ADDxPRS 4862 1.137 1.321 0.1864
114 10 rs7923866 0 T ADDxPRS 4862 1.209 1.888 0.05899
12 3 rs9311101 0 A ADDxPRS 4862 0.995 -0.04751 0.9621
45 5 rs9313871 0 G ADDxPRS 4862 1.121 0.9429 0.3457
3 1 rs9324187 0 T ADDxPRS 4862 1.019 0.1923 0.8475
66 6 rs9348440 0 T ADDxPRS 4862 1.058 0.4024 0.6874
63 6 rs9366357 0 T ADDxPRS 4862 1.022 0.2212 0.8249
84 6 rs9369425 0 G ADDxPRS 4862 0.9339 -0.6581 0.5105
75 6 rs9460546 0 G ADDxPRS 4862 0.9577 -0.4381 0.6613
78 6 rs9465871 0 C ADDxPRS 4862 0.9681 -0.273 0.7849
87 6 rs9472138 0 T ADDxPRS 4862 0.9294 -0.7046 0.481
15 3 rs9860730 0 G ADDxPRS 4862 1.026 0.2378 0.8121
p1.0000e-01
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.073 | 0.8952 | 0.3707 |
90 7 rs10267273 0 T ADDxPRS 4862 1.015 0.1856 0.8528
51 6 rs10458159 0 T ADDxPRS 4862 1.073 0.7736 0.4392
42 5 rs10476539 0 A ADDxPRS 4862 0.9962 -0.03934 0.9686
108 10 rs10509645 0 A ADDxPRS 4862 1.295 3.095 0.00197
132 10 rs10787472 0 C ADDxPRS 4862 0.9657 -0.4493 0.6532
105 9 rs10811661 0 C ADDxPRS 4862 1.196 1.597 0.1103
141 10 rs10885409 0 C ADDxPRS 4862 1.023 0.293 0.7696
72 6 rs10946398 0 C ADDxPRS 4862 0.9869 -0.1653 0.8687
159 14 rs11160006 0 C ADDxPRS 4862 1.043 0.5339 0.5934
144 10 rs11196208 0 C ADDxPRS 4862 1.029 0.3726 0.7094
57 6 rs11243149 0 G ADDxPRS 4862 1.183 2.105 0.03533
60 6 rs11243150 0 C ADDxPRS 4862 1.183 2.104 0.03541
6 3 rs11709077 0 A ADDxPRS 4862 1.136 1.061 0.2887
135 10 rs12243326 0 C ADDxPRS 4862 0.9267 -0.8981 0.3691
30 3 rs1470579 0 C ADDxPRS 4862 1.091 1.065 0.2868
96 7 rs1549392 0 G ADDxPRS 4862 1.048 0.5932 0.553
153 13 rs16975654 0 A ADDxPRS 4862 0.9058 -0.8549 0.3926
9 3 rs17036328 0 C ADDxPRS 4862 1.124 0.978 0.3281
33 4 rs223452 0 T ADDxPRS 4862 0.9541 -0.5975 0.5501
102 9 rs2383208 0 G ADDxPRS 4862 1.18 1.476 0.14
162 18 rs299751 0 G ADDxPRS 4862 1.034 0.3064 0.7593
123 10 rs4074720 0 T ADDxPRS 4862 0.9459 -0.7188 0.4723
129 10 rs4132670 0 A ADDxPRS 4862 0.9343 -0.8264 0.4086
21 3 rs4376068 0 C ADDxPRS 4862 1.088 1.035 0.3006
24 3 rs4402960 0 T ADDxPRS 4862 1.085 0.9996 0.3175
18 3 rs4607103 0 T ADDxPRS 4862 0.9359 -0.706 0.4802
150 12 rs4883520 0 T ADDxPRS 4862 1.043 0.5158 0.606
111 10 rs5015480 0 T ADDxPRS 4862 1.188 2.136 0.03269
147 11 rs570583 0 G ADDxPRS 4862 0.9973 -0.03457 0.9724
165 20 rs6124298 0 A ADDxPRS 4862 1.109 1.189 0.2343
69 6 rs6456368 0 C ADDxPRS 4862 0.99 -0.1245 0.9009
48 6 rs6940109 0 T ADDxPRS 4862 1.024 0.2564 0.7977
138 10 rs7077039 0 C ADDxPRS 4862 0.998 -0.0253 0.9798
36 4 rs724447 0 C ADDxPRS 4862 0.9149 -1.135 0.2563
156 14 rs760233 0 T ADDxPRS 4862 1.121 1.27 0.2041
27 3 rs7651090 0 G ADDxPRS 4862 1.086 1.008 0.3134
39 4 rs7676765 0 C ADDxPRS 4862 0.9134 -1.156 0.2479
54 6 rs7741671 0 C ADDxPRS 4862 1.085 0.8985 0.3689
81 6 rs7767391 0 C ADDxPRS 4862 1.005 0.05208 0.9585
93 7 rs7798124 0 A ADDxPRS 4862 1.015 0.1987 0.8425
120 10 rs7901275 0 C ADDxPRS 4862 1.065 0.8052 0.4207
126 10 rs7901695 0 C ADDxPRS 4862 0.919 -1.025 0.3054
117 10 rs7917983 0 C ADDxPRS 4862 1.095 1.16 0.2459
114 10 rs7923866 0 T ADDxPRS 4862 1.143 1.641 0.1008
12 3 rs9311101 0 A ADDxPRS 4862 1.033 0.375 0.7077
45 5 rs9313871 0 G ADDxPRS 4862 1.053 0.5346 0.5929
3 1 rs9324187 0 T ADDxPRS 4862 0.981 -0.2442 0.8071
66 6 rs9348440 0 T ADDxPRS 4862 1.042 0.3683 0.7127
63 6 rs9366357 0 T ADDxPRS 4862 1.02 0.2437 0.8075
84 6 rs9369425 0 G ADDxPRS 4862 0.9117 -1.102 0.2706
75 6 rs9460546 0 G ADDxPRS 4862 0.9869 -0.1653 0.8687
78 6 rs9465871 0 C ADDxPRS 4862 0.975 -0.2615 0.7937
87 6 rs9472138 0 T ADDxPRS 4862 0.9086 -1.141 0.2537
15 3 rs9860730 0 G ADDxPRS 4862 1.042 0.4691 0.639
p3.0000e-02
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.079 | 1.282 | 0.1998 |
90 7 rs10267273 0 T ADDxPRS 4862 0.9655 -0.5913 0.5543
51 6 rs10458159 0 T ADDxPRS 4862 1.041 0.5822 0.5604
42 5 rs10476539 0 A ADDxPRS 4862 0.9588 -0.5744 0.5657
108 10 rs10509645 0 A ADDxPRS 4862 1.169 2.466 0.01365
132 10 rs10787472 0 C ADDxPRS 4862 0.9827 -0.2956 0.7675
105 9 rs10811661 0 C ADDxPRS 4862 1.174 1.876 0.06064
141 10 rs10885409 0 C ADDxPRS 4862 1.026 0.4368 0.6623
72 6 rs10946398 0 C ADDxPRS 4862 1.011 0.1744 0.8616
159 14 rs11160006 0 C ADDxPRS 4862 1.039 0.6415 0.5212
144 10 rs11196208 0 C ADDxPRS 4862 1.028 0.4692 0.6389
57 6 rs11243149 0 G ADDxPRS 4862 1.129 1.996 0.04595
60 6 rs11243150 0 C ADDxPRS 4862 1.129 1.992 0.04632
6 3 rs11709077 0 A ADDxPRS 4862 1.146 1.472 0.1411
135 10 rs12243326 0 C ADDxPRS 4862 0.9602 -0.6345 0.5257
30 3 rs1470579 0 C ADDxPRS 4862 1.08 1.231 0.2184
96 7 rs1549392 0 G ADDxPRS 4862 1.066 1.072 0.2838
153 13 rs16975654 0 A ADDxPRS 4862 0.9384 -0.7247 0.4687
9 3 rs17036328 0 C ADDxPRS 4862 1.121 1.249 0.2115
33 4 rs223452 0 T ADDxPRS 4862 0.9933 -0.1126 0.9104
102 9 rs2383208 0 G ADDxPRS 4862 1.164 1.783 0.07466
162 18 rs299751 0 G ADDxPRS 4862 1.011 0.1305 0.8961
123 10 rs4074720 0 T ADDxPRS 4862 0.9689 -0.5362 0.5918
129 10 rs4132670 0 A ADDxPRS 4862 0.9577 -0.6969 0.4859
21 3 rs4376068 0 C ADDxPRS 4862 1.079 1.215 0.2246
24 3 rs4402960 0 T ADDxPRS 4862 1.078 1.202 0.2293
18 3 rs4607103 0 T ADDxPRS 4862 0.9702 -0.4261 0.6701
150 12 rs4883520 0 T ADDxPRS 4862 1.011 0.1785 0.8584
111 10 rs5015480 0 T ADDxPRS 4862 1.095 1.485 0.1376
147 11 rs570583 0 G ADDxPRS 4862 0.9901 -0.1689 0.8658
165 20 rs6124298 0 A ADDxPRS 4862 1.058 0.8618 0.3888
69 6 rs6456368 0 C ADDxPRS 4862 1.01 0.1628 0.8707
48 6 rs6940109 0 T ADDxPRS 4862 0.9966 -0.04748 0.9621
138 10 rs7077039 0 C ADDxPRS 4862 1.013 0.2161 0.8289
36 4 rs724447 0 C ADDxPRS 4862 0.965 -0.6017 0.5474
156 14 rs760233 0 T ADDxPRS 4862 1.046 0.6646 0.5063
27 3 rs7651090 0 G ADDxPRS 4862 1.077 1.196 0.2315
39 4 rs7676765 0 C ADDxPRS 4862 0.9633 -0.6317 0.5276
54 6 rs7741671 0 C ADDxPRS 4862 1.053 0.7511 0.4526
81 6 rs7767391 0 C ADDxPRS 4862 1.007 0.1025 0.9183
93 7 rs7798124 0 A ADDxPRS 4862 0.9652 -0.6079 0.5433
120 10 rs7901275 0 C ADDxPRS 4862 1.037 0.6192 0.5358
126 10 rs7901695 0 C ADDxPRS 4862 0.9489 -0.845 0.3981
117 10 rs7917983 0 C ADDxPRS 4862 1.053 0.8728 0.3828
114 10 rs7923866 0 T ADDxPRS 4862 1.071 1.114 0.2654
12 3 rs9311101 0 A ADDxPRS 4862 1.049 0.7361 0.4617
45 5 rs9313871 0 G ADDxPRS 4862 1.003 0.04608 0.9632
3 1 rs9324187 0 T ADDxPRS 4862 0.9674 -0.5583 0.5766
66 6 rs9348440 0 T ADDxPRS 4862 1.022 0.262 0.7933
63 6 rs9366357 0 T ADDxPRS 4862 1.011 0.1827 0.855
84 6 rs9369425 0 G ADDxPRS 4862 0.9219 -1.294 0.1958
75 6 rs9460546 0 G ADDxPRS 4862 1.011 0.1744 0.8616
78 6 rs9465871 0 C ADDxPRS 4862 0.986 -0.1919 0.8478
87 6 rs9472138 0 T ADDxPRS 4862 0.9202 -1.323 0.1859
15 3 rs9860730 0 G ADDxPRS 4862 1.054 0.8047 0.421
p1.0000e-02
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.088 | 1.51 | 0.131 |
90 7 rs10267273 0 T ADDxPRS 4862 0.9542 -0.8407 0.4005
51 6 rs10458159 0 T ADDxPRS 4862 1.039 0.5904 0.5549
42 5 rs10476539 0 A ADDxPRS 4862 0.9422 -0.8652 0.3869
108 10 rs10509645 0 A ADDxPRS 4862 1.118 1.867 0.06197
132 10 rs10787472 0 C ADDxPRS 4862 0.982 -0.326 0.7444
105 9 rs10811661 0 C ADDxPRS 4862 1.162 1.881 0.06003
141 10 rs10885409 0 C ADDxPRS 4862 1.024 0.4161 0.6773
72 6 rs10946398 0 C ADDxPRS 4862 1.023 0.3949 0.6929
159 14 rs11160006 0 C ADDxPRS 4862 1.05 0.8654 0.3868
144 10 rs11196208 0 C ADDxPRS 4862 1.024 0.4257 0.6704
57 6 rs11243149 0 G ADDxPRS 4862 1.091 1.523 0.1278
60 6 rs11243150 0 C ADDxPRS 4862 1.091 1.521 0.1283
6 3 rs11709077 0 A ADDxPRS 4862 1.149 1.587 0.1125
135 10 rs12243326 0 C ADDxPRS 4862 0.9662 -0.5733 0.5665
30 3 rs1470579 0 C ADDxPRS 4862 1.07 1.161 0.2455
96 7 rs1549392 0 G ADDxPRS 4862 1.082 1.404 0.1604
153 13 rs16975654 0 A ADDxPRS 4862 0.9433 -0.709 0.4783
9 3 rs17036328 0 C ADDxPRS 4862 1.113 1.242 0.2143
33 4 rs223452 0 T ADDxPRS 4862 1.005 0.0978 0.9221
102 9 rs2383208 0 G ADDxPRS 4862 1.158 1.833 0.06682
162 18 rs299751 0 G ADDxPRS 4862 0.9982 -0.02263 0.9819
123 10 rs4074720 0 T ADDxPRS 4862 0.9718 -0.514 0.6072
129 10 rs4132670 0 A ADDxPRS 4862 0.9593 -0.7141 0.4752
21 3 rs4376068 0 C ADDxPRS 4862 1.07 1.156 0.2478
24 3 rs4402960 0 T ADDxPRS 4862 1.07 1.157 0.2473
18 3 rs4607103 0 T ADDxPRS 4862 0.9972 -0.04211 0.9664
150 12 rs4883520 0 T ADDxPRS 4862 1 0.002688 0.9979
111 10 rs5015480 0 T ADDxPRS 4862 1.065 1.109 0.2672
147 11 rs570583 0 G ADDxPRS 4862 0.9933 -0.1218 0.9031
165 20 rs6124298 0 A ADDxPRS 4862 1.044 0.7064 0.4799
69 6 rs6456368 0 C ADDxPRS 4862 1.022 0.3835 0.7014
48 6 rs6940109 0 T ADDxPRS 4862 0.9906 -0.139 0.8895
138 10 rs7077039 0 C ADDxPRS 4862 1.012 0.2168 0.8284
36 4 rs724447 0 C ADDxPRS 4862 0.9832 -0.3051 0.7603
156 14 rs760233 0 T ADDxPRS 4862 1.011 0.1707 0.8645
27 3 rs7651090 0 G ADDxPRS 4862 1.069 1.138 0.2551
39 4 rs7676765 0 C ADDxPRS 4862 0.9821 -0.3249 0.7452
54 6 rs7741671 0 C ADDxPRS 4862 1.052 0.7741 0.4389
81 6 rs7767391 0 C ADDxPRS 4862 1.012 0.172 0.8634
93 7 rs7798124 0 A ADDxPRS 4862 0.9537 -0.8676 0.3856
120 10 rs7901275 0 C ADDxPRS 4862 1.02 0.3581 0.7203
126 10 rs7901695 0 C ADDxPRS 4862 0.9523 -0.8404 0.4007
117 10 rs7917983 0 C ADDxPRS 4862 1.026 0.4698 0.6385
114 10 rs7923866 0 T ADDxPRS 4862 1.052 0.8854 0.3759
12 3 rs9311101 0 A ADDxPRS 4862 1.058 0.9278 0.3535
45 5 rs9313871 0 G ADDxPRS 4862 0.9879 -0.1828 0.855
3 1 rs9324187 0 T ADDxPRS 4862 0.964 -0.6601 0.5092
66 6 rs9348440 0 T ADDxPRS 4862 1.016 0.2067 0.8362
63 6 rs9366357 0 T ADDxPRS 4862 1.004 0.0614 0.951
84 6 rs9369425 0 G ADDxPRS 4862 0.9408 -1.045 0.2961
75 6 rs9460546 0 G ADDxPRS 4862 1.023 0.3949 0.6929
78 6 rs9465871 0 C ADDxPRS 4862 0.9965 -0.05056 0.9597
87 6 rs9472138 0 T ADDxPRS 4862 0.9389 -1.08 0.2803
15 3 rs9860730 0 G ADDxPRS 4862 1.079 1.239 0.2154
p3.0000e-03
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.099 | 1.556 | 0.1196 |
90 7 rs10267273 0 T ADDxPRS 4862 0.9556 -0.7496 0.4535
51 6 rs10458159 0 T ADDxPRS 4862 1.052 0.7091 0.4783
42 5 rs10476539 0 A ADDxPRS 4862 0.933 -0.9256 0.3547
108 10 rs10509645 0 A ADDxPRS 4862 1.088 1.293 0.1961
132 10 rs10787472 0 C ADDxPRS 4862 0.9725 -0.4574 0.6474
105 9 rs10811661 0 C ADDxPRS 4862 1.181 1.923 0.05442
141 10 rs10885409 0 C ADDxPRS 4862 1.02 0.3277 0.7432
72 6 rs10946398 0 C ADDxPRS 4862 1.031 0.5034 0.6147
159 14 rs11160006 0 C ADDxPRS 4862 1.083 1.312 0.1894
144 10 rs11196208 0 C ADDxPRS 4862 1.019 0.3034 0.7616
57 6 rs11243149 0 G ADDxPRS 4862 1.055 0.8482 0.3963
60 6 rs11243150 0 C ADDxPRS 4862 1.055 0.851 0.3948
6 3 rs11709077 0 A ADDxPRS 4862 1.15 1.459 0.1445
135 10 rs12243326 0 C ADDxPRS 4862 0.9584 -0.6575 0.5108
30 3 rs1470579 0 C ADDxPRS 4862 1.059 0.9009 0.3677
96 7 rs1549392 0 G ADDxPRS 4862 1.105 1.629 0.1034
153 13 rs16975654 0 A ADDxPRS 4862 0.9458 -0.621 0.5346
9 3 rs17036328 0 C ADDxPRS 4862 1.1 1.007 0.3141
33 4 rs223452 0 T ADDxPRS 4862 1.004 0.07242 0.9423
102 9 rs2383208 0 G ADDxPRS 4862 1.185 1.953 0.05078
162 18 rs299751 0 G ADDxPRS 4862 0.9895 -0.1243 0.9011
123 10 rs4074720 0 T ADDxPRS 4862 0.9664 -0.5636 0.573
129 10 rs4132670 0 A ADDxPRS 4862 0.9486 -0.8367 0.4028
21 3 rs4376068 0 C ADDxPRS 4862 1.058 0.8904 0.3733
24 3 rs4402960 0 T ADDxPRS 4862 1.059 0.9125 0.3615
18 3 rs4607103 0 T ADDxPRS 4862 1.009 0.1288 0.8975
150 12 rs4883520 0 T ADDxPRS 4862 0.994 -0.09608 0.9235
111 10 rs5015480 0 T ADDxPRS 4862 1.062 0.9776 0.3283
147 11 rs570583 0 G ADDxPRS 4862 0.998 -0.0334 0.9734
165 20 rs6124298 0 A ADDxPRS 4862 1.058 0.8534 0.3934
69 6 rs6456368 0 C ADDxPRS 4862 1.033 0.524 0.6003
48 6 rs6940109 0 T ADDxPRS 4862 0.9877 -0.1676 0.8669
138 10 rs7077039 0 C ADDxPRS 4862 1.004 0.05971 0.9524
36 4 rs724447 0 C ADDxPRS 4862 0.9848 -0.2536 0.7998
156 14 rs760233 0 T ADDxPRS 4862 0.9917 -0.119 0.9053
27 3 rs7651090 0 G ADDxPRS 4862 1.057 0.879 0.3794
39 4 rs7676765 0 C ADDxPRS 4862 0.985 -0.2498 0.8028
54 6 rs7741671 0 C ADDxPRS 4862 1.065 0.877 0.3805
81 6 rs7767391 0 C ADDxPRS 4862 1.016 0.2169 0.8282
93 7 rs7798124 0 A ADDxPRS 4862 0.9542 -0.7888 0.4302
120 10 rs7901275 0 C ADDxPRS 4862 1.003 0.05569 0.9556
126 10 rs7901695 0 C ADDxPRS 4862 0.9411 -0.9652 0.3345
117 10 rs7917983 0 C ADDxPRS 4862 0.9977 -0.03895 0.9689
114 10 rs7923866 0 T ADDxPRS 4862 1.062 0.9605 0.3368
12 3 rs9311101 0 A ADDxPRS 4862 1.075 1.091 0.2752
45 5 rs9313871 0 G ADDxPRS 4862 0.9832 -0.2345 0.8146
3 1 rs9324187 0 T ADDxPRS 4862 0.9591 -0.6927 0.4885
66 6 rs9348440 0 T ADDxPRS 4862 1.02 0.2295 0.8185
63 6 rs9366357 0 T ADDxPRS 4862 0.9973 -0.04357 0.9652
84 6 rs9369425 0 G ADDxPRS 4862 0.9517 -0.786 0.4319
75 6 rs9460546 0 G ADDxPRS 4862 1.031 0.5034 0.6147
78 6 rs9465871 0 C ADDxPRS 4862 1.007 0.09666 0.923
87 6 rs9472138 0 T ADDxPRS 4862 0.9486 -0.8376 0.4022
15 3 rs9860730 0 G ADDxPRS 4862 1.108 1.542 0.123
p1.0000e-03
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.111 | 1.549 | 0.1215 |
90 7 rs10267273 0 T ADDxPRS 4862 0.9678 -0.4802 0.6311
51 6 rs10458159 0 T ADDxPRS 4862 1.068 0.8172 0.4138
42 5 rs10476539 0 A ADDxPRS 4862 0.9331 -0.8219 0.4112
108 10 rs10509645 0 A ADDxPRS 4862 1.073 0.9649 0.3346
132 10 rs10787472 0 C ADDxPRS 4862 0.9664 -0.5006 0.6167
105 9 rs10811661 0 C ADDxPRS 4862 1.2 1.884 0.05954
141 10 rs10885409 0 C ADDxPRS 4862 1.018 0.267 0.7894
72 6 rs10946398 0 C ADDxPRS 4862 1.031 0.4444 0.6567
159 14 rs11160006 0 C ADDxPRS 4862 1.115 1.598 0.11
144 10 rs11196208 0 C ADDxPRS 4862 1.016 0.2355 0.8139
57 6 rs11243149 0 G ADDxPRS 4862 1.03 0.4211 0.6737
60 6 rs11243150 0 C ADDxPRS 4862 1.031 0.4304 0.6669
6 3 rs11709077 0 A ADDxPRS 4862 1.154 1.325 0.1853
135 10 rs12243326 0 C ADDxPRS 4862 0.9479 -0.7433 0.4573
30 3 rs1470579 0 C ADDxPRS 4862 1.042 0.5826 0.5602
96 7 rs1549392 0 G ADDxPRS 4862 1.127 1.746 0.08088
153 13 rs16975654 0 A ADDxPRS 4862 0.9576 -0.4283 0.6684
9 3 rs17036328 0 C ADDxPRS 4862 1.091 0.8137 0.4158
33 4 rs223452 0 T ADDxPRS 4862 1.001 0.01177 0.9906
102 9 rs2383208 0 G ADDxPRS 4862 1.207 1.941 0.05226
162 18 rs299751 0 G ADDxPRS 4862 0.984 -0.1698 0.8652
123 10 rs4074720 0 T ADDxPRS 4862 0.959 -0.6164 0.5377
129 10 rs4132670 0 A ADDxPRS 4862 0.9398 -0.88 0.3788
21 3 rs4376068 0 C ADDxPRS 4862 1.042 0.5825 0.5603
24 3 rs4402960 0 T ADDxPRS 4862 1.044 0.6095 0.5422
18 3 rs4607103 0 T ADDxPRS 4862 1.012 0.1463 0.8837
150 12 rs4883520 0 T ADDxPRS 4862 0.9896 -0.1475 0.8827
111 10 rs5015480 0 T ADDxPRS 4862 1.067 0.9453 0.3445
147 11 rs570583 0 G ADDxPRS 4862 0.999 -0.0147 0.9883
165 20 rs6124298 0 A ADDxPRS 4862 1.076 0.9932 0.3206
69 6 rs6456368 0 C ADDxPRS 4862 1.035 0.4935 0.6216
48 6 rs6940109 0 T ADDxPRS 4862 0.9933 -0.0813 0.9352
138 10 rs7077039 0 C ADDxPRS 4862 0.9979 -0.03096 0.9753
36 4 rs724447 0 C ADDxPRS 4862 0.9797 -0.3019 0.7627
156 14 rs760233 0 T ADDxPRS 4862 0.9859 -0.1809 0.8564
27 3 rs7651090 0 G ADDxPRS 4862 1.041 0.5722 0.5672
39 4 rs7676765 0 C ADDxPRS 4862 0.9805 -0.2892 0.7724
54 6 rs7741671 0 C ADDxPRS 4862 1.081 0.9682 0.3329
81 6 rs7767391 0 C ADDxPRS 4862 1.014 0.1695 0.8654
93 7 rs7798124 0 A ADDxPRS 4862 0.9668 -0.5044 0.614
120 10 rs7901275 0 C ADDxPRS 4862 0.985 -0.2236 0.823
126 10 rs7901695 0 C ADDxPRS 4862 0.9323 -0.9946 0.3199
117 10 rs7917983 0 C ADDxPRS 4862 0.9708 -0.4368 0.6622
114 10 rs7923866 0 T ADDxPRS 4862 1.079 1.092 0.2748
12 3 rs9311101 0 A ADDxPRS 4862 1.1 1.267 0.2051
45 5 rs9313871 0 G ADDxPRS 4862 0.9929 -0.08659 0.931
3 1 rs9324187 0 T ADDxPRS 4862 0.9575 -0.6412 0.5214
66 6 rs9348440 0 T ADDxPRS 4862 1.019 0.1915 0.8481
63 6 rs9366357 0 T ADDxPRS 4862 0.9856 -0.2085 0.8349
84 6 rs9369425 0 G ADDxPRS 4862 0.9546 -0.6579 0.5106
75 6 rs9460546 0 G ADDxPRS 4862 1.031 0.4444 0.6567
78 6 rs9465871 0 C ADDxPRS 4862 1.01 0.122 0.9029
87 6 rs9472138 0 T ADDxPRS 4862 0.9509 -0.7132 0.4757
15 3 rs9860730 0 G ADDxPRS 4862 1.132 1.667 0.09553
p3.0000e-04
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.131 | 1.631 | 0.1029 |
90 7 rs10267273 0 T ADDxPRS 4862 0.9715 -0.3782 0.7053
51 6 rs10458159 0 T ADDxPRS 4862 1.068 0.7291 0.4659
42 5 rs10476539 0 A ADDxPRS 4862 0.9529 -0.5105 0.6097
108 10 rs10509645 0 A ADDxPRS 4862 1.079 0.9335 0.3506
132 10 rs10787472 0 C ADDxPRS 4862 0.971 -0.3858 0.6997
105 9 rs10811661 0 C ADDxPRS 4862 1.216 1.807 0.07069
141 10 rs10885409 0 C ADDxPRS 4862 1.026 0.3323 0.7397
72 6 rs10946398 0 C ADDxPRS 4862 1.038 0.4756 0.6343
159 14 rs11160006 0 C ADDxPRS 4862 1.133 1.635 0.1021
144 10 rs11196208 0 C ADDxPRS 4862 1.022 0.2915 0.7707
57 6 rs11243149 0 G ADDxPRS 4862 1.043 0.5336 0.5936
60 6 rs11243150 0 C ADDxPRS 4862 1.044 0.5445 0.5861
6 3 rs11709077 0 A ADDxPRS 4862 1.143 1.091 0.2751
135 10 rs12243326 0 C ADDxPRS 4862 0.9493 -0.6515 0.5147
30 3 rs1470579 0 C ADDxPRS 4862 1.034 0.4267 0.6696
96 7 rs1549392 0 G ADDxPRS 4862 1.151 1.847 0.06479
153 13 rs16975654 0 A ADDxPRS 4862 0.9865 -0.1204 0.9042
9 3 rs17036328 0 C ADDxPRS 4862 1.066 0.5324 0.5944
33 4 rs223452 0 T ADDxPRS 4862 1.01 0.1364 0.8915
102 9 rs2383208 0 G ADDxPRS 4862 1.227 1.889 0.05895
162 18 rs299751 0 G ADDxPRS 4862 1.005 0.05082 0.9595
123 10 rs4074720 0 T ADDxPRS 4862 0.959 -0.551 0.5817
129 10 rs4132670 0 A ADDxPRS 4862 0.9454 -0.7132 0.4757
21 3 rs4376068 0 C ADDxPRS 4862 1.035 0.4349 0.6636
24 3 rs4402960 0 T ADDxPRS 4862 1.038 0.4675 0.6402
18 3 rs4607103 0 T ADDxPRS 4862 1.006 0.06759 0.9461
150 12 rs4883520 0 T ADDxPRS 4862 0.9848 -0.19 0.8493
111 10 rs5015480 0 T ADDxPRS 4862 1.079 0.9873 0.3235
147 11 rs570583 0 G ADDxPRS 4862 1.012 0.1635 0.8701
165 20 rs6124298 0 A ADDxPRS 4862 1.099 1.136 0.256
69 6 rs6456368 0 C ADDxPRS 4862 1.045 0.5575 0.5772
48 6 rs6940109 0 T ADDxPRS 4862 0.9978 -0.02337 0.9814
138 10 rs7077039 0 C ADDxPRS 4862 1.004 0.05485 0.9563
36 4 rs724447 0 C ADDxPRS 4862 0.9828 -0.2277 0.8199
156 14 rs760233 0 T ADDxPRS 4862 0.9809 -0.2201 0.8258
27 3 rs7651090 0 G ADDxPRS 4862 1.036 0.4441 0.6569
39 4 rs7676765 0 C ADDxPRS 4862 0.9835 -0.218 0.8274
54 6 rs7741671 0 C ADDxPRS 4862 1.079 0.8401 0.4008
81 6 rs7767391 0 C ADDxPRS 4862 1.033 0.3483 0.7276
93 7 rs7798124 0 A ADDxPRS 4862 0.9727 -0.3686 0.7124
120 10 rs7901275 0 C ADDxPRS 4862 0.9657 -0.4591 0.6461
126 10 rs7901695 0 C ADDxPRS 4862 0.9374 -0.8214 0.4114
117 10 rs7917983 0 C ADDxPRS 4862 0.945 -0.7436 0.4571
114 10 rs7923866 0 T ADDxPRS 4862 1.105 1.276 0.2018
12 3 rs9311101 0 A ADDxPRS 4862 1.11 1.231 0.2184
45 5 rs9313871 0 G ADDxPRS 4862 1.003 0.02844 0.9773
3 1 rs9324187 0 T ADDxPRS 4862 0.9607 -0.531 0.5954
66 6 rs9348440 0 T ADDxPRS 4862 1.033 0.2995 0.7646
63 6 rs9366357 0 T ADDxPRS 4862 0.9706 -0.3818 0.7026
84 6 rs9369425 0 G ADDxPRS 4862 0.9491 -0.6619 0.508
75 6 rs9460546 0 G ADDxPRS 4862 1.038 0.4756 0.6343
78 6 rs9465871 0 C ADDxPRS 4862 1.035 0.3684 0.7126
87 6 rs9472138 0 T ADDxPRS 4862 0.9454 -0.7107 0.4773
15 3 rs9860730 0 G ADDxPRS 4862 1.147 1.65 0.09893
p1.0000e-04
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | |
|---|---|---|---|---|---|---|---|---|---|
| 99 | 7 | rs10252043 | 0 | A | ADDxPRS | 4862 | 1.145 | 1.674 | 0.09404 |
90 7 rs10267273 0 T ADDxPRS 4862 0.968 -0.3974 0.6911
51 6 rs10458159 0 T ADDxPRS 4862 1.056 0.5627 0.5736
42 5 rs10476539 0 A ADDxPRS 4862 0.9664 -0.3379 0.7355
108 10 rs10509645 0 A ADDxPRS 4862 1.074 0.8232 0.4104
132 10 rs10787472 0 C ADDxPRS 4862 0.9824 -0.2176 0.8277
105 9 rs10811661 0 C ADDxPRS 4862 1.206 1.615 0.1064
141 10 rs10885409 0 C ADDxPRS 4862 1.037 0.4449 0.6564
72 6 rs10946398 0 C ADDxPRS 4862 1.056 0.6569 0.5112
159 14 rs11160006 0 C ADDxPRS 4862 1.134 1.544 0.1226
144 10 rs11196208 0 C ADDxPRS 4862 1.033 0.4003 0.6889
57 6 rs11243149 0 G ADDxPRS 4862 1.071 0.8197 0.4124
60 6 rs11243150 0 C ADDxPRS 4862 1.072 0.83 0.4065
6 3 rs11709077 0 A ADDxPRS 4862 1.153 1.079 0.2806
135 10 rs12243326 0 C ADDxPRS 4862 0.9558 -0.5314 0.5951
30 3 rs1470579 0 C ADDxPRS 4862 1.044 0.5091 0.6107
96 7 rs1549392 0 G ADDxPRS 4862 1.164 1.862 0.06254
153 13 rs16975654 0 A ADDxPRS 4862 1.002 0.01886 0.985
9 3 rs17036328 0 C ADDxPRS 4862 1.069 0.5169 0.6052
33 4 rs223452 0 T ADDxPRS 4862 1.025 0.3014 0.7631
102 9 rs2383208 0 G ADDxPRS 4862 1.218 1.706 0.08799
162 18 rs299751 0 G ADDxPRS 4862 1.033 0.2802 0.7793
123 10 rs4074720 0 T ADDxPRS 4862 0.9679 -0.4019 0.6878
129 10 rs4132670 0 A ADDxPRS 4862 0.9548 -0.5489 0.5831
21 3 rs4376068 0 C ADDxPRS 4862 1.044 0.515 0.6066
24 3 rs4402960 0 T ADDxPRS 4862 1.048 0.5536 0.5799
18 3 rs4607103 0 T ADDxPRS 4862 0.9955 -0.04834 0.9614
150 12 rs4883520 0 T ADDxPRS 4862 0.9733 -0.3103 0.7563
111 10 rs5015480 0 T ADDxPRS 4862 1.074 0.8671 0.3859
147 11 rs570583 0 G ADDxPRS 4862 1.041 0.5019 0.6158
165 20 rs6124298 0 A ADDxPRS 4862 1.109 1.166 0.2438
69 6 rs6456368 0 C ADDxPRS 4862 1.066 0.7679 0.4425
48 6 rs6940109 0 T ADDxPRS 4862 0.998 -0.01992 0.9841
138 10 rs7077039 0 C ADDxPRS 4862 1.017 0.2021 0.8398
36 4 rs724447 0 C ADDxPRS 4862 0.9939 -0.0743 0.9408
156 14 rs760233 0 T ADDxPRS 4862 0.9763 -0.2557 0.7981
27 3 rs7651090 0 G ADDxPRS 4862 1.047 0.5411 0.5884
39 4 rs7676765 0 C ADDxPRS 4862 0.9945 -0.06765 0.9461
54 6 rs7741671 0 C ADDxPRS 4862 1.063 0.6267 0.5309
81 6 rs7767391 0 C ADDxPRS 4862 1.05 0.487 0.6263
93 7 rs7798124 0 A ADDxPRS 4862 0.973 -0.3414 0.7328
120 10 rs7901275 0 C ADDxPRS 4862 0.9503 -0.6244 0.5323
126 10 rs7901695 0 C ADDxPRS 4862 0.9468 -0.6479 0.517
117 10 rs7917983 0 C ADDxPRS 4862 0.9269 -0.9297 0.3525
114 10 rs7923866 0 T ADDxPRS 4862 1.112 1.262 0.2071
12 3 rs9311101 0 A ADDxPRS 4862 1.101 1.07 0.2844
45 5 rs9313871 0 G ADDxPRS 4862 1.016 0.1591 0.8736
3 1 rs9324187 0 T ADDxPRS 4862 0.9649 -0.4447 0.6565
66 6 rs9348440 0 T ADDxPRS 4862 1.044 0.3731 0.7091
63 6 rs9366357 0 T ADDxPRS 4862 0.974 -0.3159 0.7521
84 6 rs9369425 0 G ADDxPRS 4862 0.9486 -0.6236 0.5329
75 6 rs9460546 0 G ADDxPRS 4862 1.056 0.6569 0.5112
78 6 rs9465871 0 C ADDxPRS 4862 1.059 0.5738 0.5661
87 6 rs9472138 0 T ADDxPRS 4862 0.9449 -0.6704 0.5026